species:   Rhsol
pid:       PID0507
parent:    Rhi-milR-169
paralog:   
locus:     KB317710.1:103990-104100
matures:   ['UUGGGGCAAAUAUUAGGAACUGUUG', 'AUGGUCCAAAAGUAUUGGCUCCCUCAAGUG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317710.1:103990-104100

1 out of bounds
124 alignments
73 proper strand
10 stranded perfect matches

                 ************************             *****************************                            
CACAUAGGUAACUCCUGCCUUGGGGCAAAUAUUAGGAACUGUUGUUAUCUACUAUGGUCCAAAAGUAUUGGCUCCCUCAAGUGUUUCAGUUGCCACCUAUACCUCCUGUAC
......(((((((...(((((((((..((((((.(((.((((.((.....)).)))))))...)))))).....))))))).))...))))))).................
-------------------UUGGGGCAAAUAUUAGGAACUGUUG------------------------------------------------------------------- l=25 a=0 c
-----------------------------------------------------AUGGUCCAAAAGUAUUGGCUCCCUCAAGUG---------------------------- l=30 a=0 c*
-------------------UUGGGGCAAAUAUUAGGAACUG---------------------------------------------------------------------- l=22 a=4 ma
--------------------------------------------------------GUCCAAAAGUAUUGGCUCCCUCAAGUG---------------------------- l=27 a=0 ma*

-------------------------CAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=19 a=1 
---------------------GGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=23 a=1 
--------------------UGGGGCAAAUAUUAGGAACU----------------------------------------------------------------------- l=20 a=1 
--------------------UGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=22 a=6 
--------------------UGGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=24 a=17 
--------------------UGGGGCAAAUAUUAGGAACUGUUG------------------------------------------------------------------- l=24 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCUG---------------------------------------------------------------------- l=22 a=9 
-------------------UUGGGGCAAAUAUUAGGAACUG---------------------------------------------------------------------- l=22 a=4 (ma)
-------------------UUGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=23 a=11 
-------------------UUGGcGCAAAUAUUAGGAACUGU--------------------------------------------------------------------- l=23 a=1 
-------------------UUGGGGCAAAUAUUAGGAAuUGU--------------------------------------------------------------------- l=23 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCUGUU-------------------------------------------------------------------- l=24 a=4 
-------------------UUGGGGCAAAUAUUAGGAACUGUU-------------------------------------------------------------------- l=24 a=2 
-------------------UUGGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=25 a=6 
------------------CUUGGGGCAAAUAUUAGGAuC------------------------------------------------------------------------ l=21 a=1 
------------------CUUGGGGCAAAUAUUAGGAuCU----------------------------------------------------------------------- l=22 a=1 
------------------CUUGGGGCAAAUAUUAGGAACUG---------------------------------------------------------------------- l=23 a=1 
------------------CUUGGGGCAAAUAUUAGGAuCUG---------------------------------------------------------------------- l=23 a=1 
------------------CUUGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=24 a=1 
---------------UGCCUUGGGGCAAAUAUUAGGAuC------------------------------------------------------------------------ l=24 a=2 
---------------UGCCUUGGGGCAAAUAUUAGGAACUG---------------------------------------------------------------------- l=26 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101000
fn-101
